Characterization of a large sex determination region in Salix purpurea L. (Salicaceae).
Identifieur interne : 001003 ( Main/Exploration ); précédent : 001002; suivant : 001004Characterization of a large sex determination region in Salix purpurea L. (Salicaceae).
Auteurs : Ran Zhou [États-Unis] ; David Macaya-Sanz [États-Unis] ; Eli Rodgers-Melnick [États-Unis] ; Craig H. Carlson [États-Unis] ; Fred E. Gouker [États-Unis] ; Luke M. Evans [États-Unis] ; Jeremy Schmutz [États-Unis] ; Jerry W. Jenkins [États-Unis] ; Juying Yan [États-Unis] ; Gerald A. Tuskan [États-Unis] ; Lawrence B. Smart [États-Unis] ; Stephen P. Difazio [États-Unis]Source :
- Molecular genetics and genomics : MGG [ 1617-4623 ] ; 2018.
Descripteurs français
- KwdFr :
- Cartographie chromosomique (MeSH), Chromosomes de plante (MeSH), Chromosomes sexuels (génétique), Génome végétal (MeSH), Marqueurs génétiques (MeSH), Processus de détermination du sexe (génétique), Salicaceae (génétique), Salix (génétique), Étude d'association pangénomique (MeSH), Évolution moléculaire (MeSH).
- MESH :
English descriptors
- KwdEn :
- MESH :
Abstract
Dioecy has evolved numerous times in plants, but heteromorphic sex chromosomes are apparently rare. Sex determination has been studied in multiple Salix and Populus (Salicaceae) species, and P. trichocarpa has an XY sex determination system on chromosome 19, while S. suchowensis and S. viminalis have a ZW system on chromosome 15. Here we use whole genome sequencing coupled with quantitative trait locus mapping and a genome-wide association study to characterize the genomic composition of the non-recombining portion of the sex determination region. We demonstrate that Salix purpurea also has a ZW system on chromosome 15. The sex determination region has reduced recombination, high structural polymorphism, an abundance of transposable elements, and contains genes that are involved in sex expression in other plants. We also show that chromosome 19 contains sex-associated markers in this S. purpurea assembly, along with other autosomes. This raises the intriguing possibility of a translocation of the sex determination region within the Salicaceae lineage, suggesting a common evolutionary origin of the Populus and Salix sex determination loci.
DOI: 10.1007/s00438-018-1473-y
PubMed: 30022352
Affiliations:
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(Salicaceae).</title><author><name sortKey="Zhou, Ran" sort="Zhou, Ran" uniqKey="Zhou R" first="Ran" last="Zhou">Ran Zhou</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057</wicri:regionArea><wicri:noRegion>26506-6057</wicri:noRegion></affiliation></author><author><name sortKey="Macaya Sanz, David" sort="Macaya Sanz, David" uniqKey="Macaya Sanz D" first="David" last="Macaya-Sanz">David Macaya-Sanz</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057</wicri:regionArea><wicri:noRegion>26506-6057</wicri:noRegion></affiliation></author><author><name sortKey="Rodgers Melnick, Eli" sort="Rodgers Melnick, Eli" uniqKey="Rodgers Melnick E" first="Eli" last="Rodgers-Melnick">Eli Rodgers-Melnick</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057</wicri:regionArea><wicri:noRegion>26506-6057</wicri:noRegion></affiliation></author><author><name sortKey="Carlson, Craig H" sort="Carlson, Craig H" uniqKey="Carlson C" first="Craig H" last="Carlson">Craig H. Carlson</name><affiliation wicri:level="4"><nlm:affiliation>Horticulture Section, School of Integrative Plant Science, Cornell University, New York State Agricultural Experiment Station, Geneva, NY, 14456, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Horticulture Section, School of Integrative Plant Science, Cornell University, New York State Agricultural Experiment Station, Geneva, NY, 14456</wicri:regionArea><orgName type="university">Université Cornell</orgName><placeName><settlement type="city">Ithaca (New York)</settlement><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Gouker, Fred E" sort="Gouker, Fred E" uniqKey="Gouker F" first="Fred E" last="Gouker">Fred E. Gouker</name><affiliation wicri:level="4"><nlm:affiliation>Horticulture Section, School of Integrative Plant Science, Cornell University, New York State Agricultural Experiment Station, Geneva, NY, 14456, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Horticulture Section, School of Integrative Plant Science, Cornell University, New York State Agricultural Experiment Station, Geneva, NY, 14456</wicri:regionArea><orgName type="university">Université Cornell</orgName><placeName><settlement type="city">Ithaca (New York)</settlement><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Evans, Luke M" sort="Evans, Luke M" uniqKey="Evans L" first="Luke M" last="Evans">Luke M. Evans</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057</wicri:regionArea><wicri:noRegion>26506-6057</wicri:noRegion></affiliation></author><author><name sortKey="Schmutz, Jeremy" sort="Schmutz, Jeremy" uniqKey="Schmutz J" first="Jeremy" last="Schmutz">Jeremy Schmutz</name><affiliation wicri:level="1"><nlm:affiliation>HudsonAlpha Institute of Biotechnology, 601 Genome Way Northwest, Huntsville, AL, 35806, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>HudsonAlpha Institute of Biotechnology, 601 Genome Way Northwest, Huntsville, AL, 35806</wicri:regionArea><wicri:noRegion>35806</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598</wicri:regionArea><wicri:noRegion>94598</wicri:noRegion></affiliation></author><author><name sortKey="Jenkins, Jerry W" sort="Jenkins, Jerry W" uniqKey="Jenkins J" first="Jerry W" last="Jenkins">Jerry W. Jenkins</name><affiliation wicri:level="1"><nlm:affiliation>HudsonAlpha Institute of Biotechnology, 601 Genome Way Northwest, Huntsville, AL, 35806, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>HudsonAlpha Institute of Biotechnology, 601 Genome Way Northwest, Huntsville, AL, 35806</wicri:regionArea><wicri:noRegion>35806</wicri:noRegion></affiliation></author><author><name sortKey="Yan, Juying" sort="Yan, Juying" uniqKey="Yan J" first="Juying" last="Yan">Juying Yan</name><affiliation wicri:level="1"><nlm:affiliation>Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598</wicri:regionArea><wicri:noRegion>94598</wicri:noRegion></affiliation></author><author><name sortKey="Tuskan, Gerald A" sort="Tuskan, Gerald A" uniqKey="Tuskan G" first="Gerald A" last="Tuskan">Gerald A. Tuskan</name><affiliation wicri:level="1"><nlm:affiliation>Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598</wicri:regionArea><wicri:noRegion>94598</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Biosciences Division, Oak Ridge National Lab, Oak Ridge, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Biosciences Division, Oak Ridge National Lab, Oak Ridge</wicri:regionArea><wicri:noRegion>Oak Ridge</wicri:noRegion></affiliation></author><author><name sortKey="Smart, Lawrence B" sort="Smart, Lawrence B" uniqKey="Smart L" first="Lawrence B" last="Smart">Lawrence B. Smart</name><affiliation wicri:level="4"><nlm:affiliation>Horticulture Section, School of Integrative Plant Science, Cornell University, New York State Agricultural Experiment Station, Geneva, NY, 14456, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Horticulture Section, School of Integrative Plant Science, Cornell University, New York State Agricultural Experiment Station, Geneva, NY, 14456</wicri:regionArea><orgName type="university">Université Cornell</orgName><placeName><settlement type="city">Ithaca (New York)</settlement><region type="state">État de New York</region></placeName></affiliation></author><author><name sortKey="Difazio, Stephen P" sort="Difazio, Stephen P" uniqKey="Difazio S" first="Stephen P" last="Difazio">Stephen P. Difazio</name><affiliation wicri:level="1"><nlm:affiliation>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA. spdifazio@mail.wvu.edu.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057</wicri:regionArea><wicri:noRegion>26506-6057</wicri:noRegion></affiliation></author></analytic><series><title level="j">Molecular genetics and genomics : MGG</title><idno type="eISSN">1617-4623</idno><imprint><date when="2018" type="published">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chromosome Mapping (MeSH)</term><term>Chromosomes, Plant (MeSH)</term><term>Evolution, Molecular (MeSH)</term><term>Genetic Markers (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Genome-Wide Association Study (MeSH)</term><term>Salicaceae (genetics)</term><term>Salix (genetics)</term><term>Sex Chromosomes (genetics)</term><term>Sex Determination Processes (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Cartographie chromosomique (MeSH)</term><term>Chromosomes de plante (MeSH)</term><term>Chromosomes sexuels (génétique)</term><term>Génome végétal (MeSH)</term><term>Marqueurs génétiques (MeSH)</term><term>Processus de détermination du sexe (génétique)</term><term>Salicaceae (génétique)</term><term>Salix (génétique)</term><term>Étude d'association pangénomique (MeSH)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Genetic Markers</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Salicaceae</term><term>Salix</term><term>Sex Chromosomes</term><term>Sex Determination Processes</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Chromosomes sexuels</term><term>Processus de détermination du sexe</term><term>Salicaceae</term><term>Salix</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term><term>Chromosomes, Plant</term><term>Evolution, Molecular</term><term>Genome, Plant</term><term>Genome-Wide Association Study</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term><term>Chromosomes de plante</term><term>Génome végétal</term><term>Marqueurs génétiques</term><term>Étude d'association pangénomique</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Dioecy has evolved numerous times in plants, but heteromorphic sex chromosomes are apparently rare. Sex determination has been studied in multiple Salix and Populus (Salicaceae) species, and P. trichocarpa has an XY sex determination system on chromosome 19, while S. suchowensis and S. viminalis have a ZW system on chromosome 15. Here we use whole genome sequencing coupled with quantitative trait locus mapping and a genome-wide association study to characterize the genomic composition of the non-recombining portion of the sex determination region. We demonstrate that Salix purpurea also has a ZW system on chromosome 15. The sex determination region has reduced recombination, high structural polymorphism, an abundance of transposable elements, and contains genes that are involved in sex expression in other plants. We also show that chromosome 19 contains sex-associated markers in this S. purpurea assembly, along with other autosomes. This raises the intriguing possibility of a translocation of the sex determination region within the Salicaceae lineage, suggesting a common evolutionary origin of the Populus and Salix sex determination loci.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30022352</PMID><DateCompleted><Year>2018</Year><Month>12</Month><Day>11</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>11</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1617-4623</ISSN><JournalIssue CitedMedium="Internet"><Volume>293</Volume><Issue>6</Issue><PubDate><Year>2018</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Molecular genetics and genomics : MGG</Title><ISOAbbreviation>Mol Genet Genomics</ISOAbbreviation></Journal><ArticleTitle>Characterization of a large sex determination region in Salix purpurea L. (Salicaceae).</ArticleTitle><Pagination><MedlinePgn>1437-1452</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00438-018-1473-y</ELocationID><Abstract><AbstractText>Dioecy has evolved numerous times in plants, but heteromorphic sex chromosomes are apparently rare. Sex determination has been studied in multiple Salix and Populus (Salicaceae) species, and P. trichocarpa has an XY sex determination system on chromosome 19, while S. suchowensis and S. viminalis have a ZW system on chromosome 15. Here we use whole genome sequencing coupled with quantitative trait locus mapping and a genome-wide association study to characterize the genomic composition of the non-recombining portion of the sex determination region. We demonstrate that Salix purpurea also has a ZW system on chromosome 15. The sex determination region has reduced recombination, high structural polymorphism, an abundance of transposable elements, and contains genes that are involved in sex expression in other plants. We also show that chromosome 19 contains sex-associated markers in this S. purpurea assembly, along with other autosomes. This raises the intriguing possibility of a translocation of the sex determination region within the Salicaceae lineage, suggesting a common evolutionary origin of the Populus and Salix sex determination loci.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zhou</LastName><ForeName>Ran</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Macaya-Sanz</LastName><ForeName>David</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rodgers-Melnick</LastName><ForeName>Eli</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Carlson</LastName><ForeName>Craig H</ForeName><Initials>CH</Initials><AffiliationInfo><Affiliation>Horticulture Section, School of Integrative Plant Science, Cornell University, New York State Agricultural Experiment Station, Geneva, NY, 14456, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gouker</LastName><ForeName>Fred E</ForeName><Initials>FE</Initials><AffiliationInfo><Affiliation>Horticulture Section, School of Integrative Plant Science, Cornell University, New York State Agricultural Experiment Station, Geneva, NY, 14456, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Evans</LastName><ForeName>Luke M</ForeName><Initials>LM</Initials><AffiliationInfo><Affiliation>Department of Biology, West Virginia University, 53 Campus Drive, Morgantown, WV, 26506-6057, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schmutz</LastName><ForeName>Jeremy</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>HudsonAlpha Institute of Biotechnology, 601 Genome Way Northwest, Huntsville, AL, 35806, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jenkins</LastName><ForeName>Jerry W</ForeName><Initials>JW</Initials><AffiliationInfo><Affiliation>HudsonAlpha Institute of Biotechnology, 601 Genome Way Northwest, Huntsville, AL, 35806, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yan</LastName><ForeName>Juying</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tuskan</LastName><ForeName>Gerald 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